A dynamic model for the regulatory network that controls terminal B cell differentiation Mendez Akram akramsharim@gmail.com Universidad Nacional Autónoma de México 2014-05-12T11:52:07Z 2016-01-27T22:29:04Z

Interleukin 4, produced by T cells

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Extracellular antigen

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Interleukin-2. Produced by T cells. Involved in Germinal Center maintenance and cell proliferation.

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Interleukin 21, produced by T cells. Promotes terminal B cell differentiation to plasma cells.

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CD40 ligand

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Interferon regulatory factor 4.

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Signal transducer and activator of transcription 5

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Transcription factor involved in signal transduction.

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Costimulatory receptor expressed on B cell surface. Mediates the direct contact between B and T cells.

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Single-stranded DNA-specific cytidine deaminase. Involved in somatic hypermutation, gene conversion, and class-switch recombination in B-lymphocytes.

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X-box-binding protein 1. Functions as a transcription factor during endoplasmic reticulum stress by regulating the unfolded protein response. Involved in antibody production by plasma cells.

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B cell receptor

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Interleukin 21 receptor.

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Interleukin 2 receptor

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Interleukin 4 receptor

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Paired box protein Pax-5. Transcription factor, plays a key role in B cell differentiation.

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Signal transducer and activator of transcription 6

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Serine/threonine kinase which acts as an essential component of the MAP kinase signal transduction pathway.

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Signal transducer and activator of transcription 3

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B-cell CLL/lymphoma 6

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PR domain containing 1, with ZNF domain. Transcriptional repressor, drives the maturation of B-lymphocytes into Ig secreting cells.

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BTB and CNC homology 1, basic leucine zipper transcription factor 2.Transcriptional regulator that acts as repressor or activator.

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Irf4 is induced in response to CD40L signals, transduced by the node NF-kappaB. Irf4 regulates its own activation and is positively regulated by Blimp1 if its inhibitor Bcl6 is off.

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Activation of the IL-2R receptor by IL-2 induces STAT5 activation.

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Activation of the CD40 receptor promotes the activation of the transcription factor NF-$\\kappa$B in response to CD40L stimulation.

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The CD40 node is activated by the input node CD40L simulating the direct contact of B with T cells mediated by the union of the CD40 receptor with its ligand CD40L.

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AID node is positively regulated by the presence of Pax5 in response to CD40 and IL-4 signals, transduced by NF-kappaB and STAT6 respectively. AID is active only if its inhibitor Blimp1 is absent.

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XBP1 is activated by Blimp1 if the suppressor Pax5 is absent.

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BCR is activated and translocated by the presence of extracellular antigen inducing a intracellular signaling response

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The IL-21R receptor is induced by IL-21, a signal required for differentiation toward plasma cells.

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The IL-2R node is induced by the input node IL-2, simulating the activation of the IL-2R receptor by IL-2 stimulation, a signal involved in differentiation of germinal center B cells.

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The IL-4 input node induces the IL-4R node simulating the activation of the IL-4R receptor activation by the cytokine IL-4 required for GC differentiation.

S_1 1

Pax5 is maintained active by low levels of Irf4 and possibly by a positive regulatory circuit with Ebf1 that plays a key role during early B cell differentiation, included as a positive autoregulatory interaction. Pax5 is inhibited if Blimp1 or ERK are present.

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Activation of the IL-4R receptor induces STAT6 in response to IL-4 stimulation.

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BCR cross-linking promotes ERK activation after Ag stimulation.

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IL-21 signals are transduced by STAT3, represented in the model as a positive interaction of the IL-21R receptor with STAT3.

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The node Bcl6 is induced in response to IL-2 and IL-4, transduced by STAT5 and STAT6 respectively. Its activation depends on the presence of Pax5, and on the mechanisms maintaining its own expression. Bcl6 node is repressed if either the nodes Blimp1, Irf4 or ERK are active.

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Blimp1 is activated by Irf4 if all its inhibitors, Pax5, Bcl6 and Bach2 are inactive. Blimp1 is induced by Ag and IL-21 which are transduced by ERK and STAT3, respectively.

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Bach2 node is activated if its positive regulator Pax5 is active and the suppressor Blimp1 is absent.

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